Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGE----GAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEAQAEHNS
4H3Z Chain:A ((22-261))
MQFDIVTLFPDMFRALTDWGITSRAAKQERYGLRTWNPRDFTTDNYRTIDDRPYGGGPGMVMLARPLEDAINAAKAAQAEQGIGGARVVMMSPQGATLNHDKVMRFAAEPGLILLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVVRHLPGVLN------QDSFVDGLLDCPHYTRPEEYDGVRVPDVLLGGHHAEIEQWRRREALRNTWLKRPDLI----VQARKNKLLSRA------
General information:
TITO was launched using:
RESULT:
Template:
4H3Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144522 for 1644 contacts (-87.9/contact) +
2D Compatibility (PS) -25190 + (NN) -11654 + (LL) 1104
1D Compatibility (HY) -26000 + (ID) 6550
Total energy: -212812.0 ( -129.45 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_4H3Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H3Z-query.scw
PDB file :
Tito_Scwrl_4H3Z.pdb
: