Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNTSAPPAVSPNITVLAPGKGPWQVAFIGITTGLLSLATVTGNLLVLISFKVNTELKTVNNYFLLSLACADLIIGTFSMNLYTTYLLMGHWALGTLACDLWLALDYVASNASVMNLLLISFDRYFSVTRPLSYRAKRTPRRAALMIGLAWLVS-FVLWAPAILFWQYLVGERTVLAGQCYIQ-----FLSQPIITFGTAMAAFYLPVTVMCTLYWRIYRETENRARELAALQGSE---------TPGK---GGGSSSSSERSQPGAEGSPETPPGRCCRCCRAPRLLQAYSWKEEEEEDEGSMESLTSSEGEEP---GSEVVIKMPMVDPEAQAPTKQPPRSSPNTVKRPTKKGRDRAG--------KGQKP-RGKEQLAKRKT-------FSLVKEKKAARTLSAILLAFILTWTPYNIMVLVSTFCKDCVPETLWELGYWLCYVNSTINPMCYALCNK-AFRDTFRLLLLCRWDKRRWRKIPKRPGSVHRTPSRQC |
3NYA Chain:A ((40-478)) | ----------------------WVVG-MGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAI---NCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGV----ITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMG-ETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKFCL-KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIY--CRSPDFRIAFQELLCL------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NYA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -123487 for 2907 contacts (-42.5/contact) +
2D Compatibility (PS) -41701 + (NN) -7151 + (LL) 2508
1D Compatibility (HY) -36400 + (ID) 5750
Total energy: -211981.0 ( -72.92 by residue)
QMean score : 0.279
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