Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MELAVGNLSEGNASWPEPPAPEPGPLFGIGVENFVTLVVFGLIFALGVLGNSLVITVLARSKPGKPRSTTNLFILNLSIADLAYLLFCIPFQATVYALPTWVLGAFICKFIHYFFTVSMLVSIFTLAAMSVDRYVAIVHSRRSSSLRVSRNALLGVGCIWALSIAMAS--PVAYHQGLFHPRASNQTFCWEQWP---DPRHKKAYVVCTFVFGYLLPLLLICFCYAKVLNHLHKKLKNMSKKSEASKKKTAQTVL-----------VVVVVFGISWLPHHIIHLWAEFGVFPLTPASFLFRITAHCLAYSNSSVNPIIYAFLSENFRKAYKQVFKCHIRKDSHLSDTKESKSRIDTPPSTNCTHV |
| 4AMJ Chain:A ((16-300)) | -------------------------------------LLMALVVLLIVAGNVLVIAAIGSTQ--RLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAIS-ALVSFLPIMMHW--WRDEDPQALKCYQD-PGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQ---------------SRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNR-DLVP-DWLF-VAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLA------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4AMJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -211716 for 1868 contacts (-113.3/contact) +
2D Compatibility (PS) -26059 + (NN) -10165 + (LL) 3580
1D Compatibility (HY) -32000 + (ID) 4150
Total energy: -280510.0 ( -150.17 by residue)
QMean score : 0.253
|
|
|