Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MANSTGLNASEVAGSLGLILAAVVEVGALLGNGALLVVVLRTPGLRDALYLAHLCVVDLLAAASIMPLGLLAAPPPGLGRVRLG-PAPCRAARFLSAALL---PACTLGVAALGLARYRLIVHPLR-----PGSRPPPVLVLTAVWAAAGLLGALSLLGTPPAPPPAPAR--------CSVLAGGLGPFRPLWALLAFA---LPALLLLGAYGGIFVVARRAALR-PPRPARGSRLHSDSLDSRLSILPPLRPRLPGGKAALAPALAVGQFAACWLP-YGCACLAPAARAAEAEAAVTWVAYSAF-------AAHPFLYGLLQRPVRLALGRLSRRALPGPVRACTPQAWHPRALLQCLQRPPEGPAVGPSEAPEQTPELAGGRSPAYQGPPESSLS |
| 3VGA Chain:A ((6-304)) | -------------SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQN---VTNYFVVSL--AAADIAVGVLAIPFAI--TISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC--WVLSFAIGLTPMLGWNNCGQ-----SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARS-----------TLQKEVHAAKSL---AIIVGLFALCWLPLHIINCF--TFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL---------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172005 for 1858 contacts (-92.6/contact) +
2D Compatibility (PS) -27289 + (NN) -13468 + (LL) 4232
1D Compatibility (HY) -25600 + (ID) 3800
Total energy: -237930.0 ( -128.06 by residue)
QMean score : 0.213
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