Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNECHYDKHMDFFYNRSNTDTVDDWTGTKLVIVLCVGTFFCLFIFFSNSLVIAAVIKNRKFHFPFYYLLANLAAADFFAGIAYVFLMFNTGPVSKTLTVNRWFLRQGLLDSSL------TASLTNLLVIAVERHMSI-MRMRVHSNLTKKRVTLLILLVWAIAIFMGAVPTLGWN-------CLCNISAC--SSLAPIYSRSYLVFWTVSNLMAFLIMVVVYLRIYVYVKRKTNVLSPHTSGSISRRRTPMKLM---KTVMTVLGAFVVCWTPGLVVLLLDGLNCRQCGVQHVKRWFLLLALL----NSVVNPIIYSYKDEDMYGTMKKMICCFSQENPERRPSRIPSTVLSRSDTGSQYIEDSISQGAVCNKSTS |
| 3VGA Chain:A ((23-303)) | ----------------------------------------------GNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAI-------PFAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQSQGCGEGQVACLFEDVVPMNYMVYFNFFACV-LVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLP-LHIINCFTFFCPDC--SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL---------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -197749 for 1737 contacts (-113.8/contact) +
2D Compatibility (PS) -25630 + (NN) -7954 + (LL) 5120
1D Compatibility (HY) -25200 + (ID) 3900
Total energy: -255313.0 ( -146.99 by residue)
QMean score : 0.310
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