Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTPLCLNCSVLPGDLYPGGARNPMACNGSAARGHFDPEDLNLTDEALRLKYLGPQQTELFMPICATYLLIFVVGAVGNGLTCLVILRHKAMRTPTNYYLFSLAVSDLLVLLVGLPLELYEMWHNYPFLLGVGGC----YFRTLLFEMVCLASVLNVTALSVERYVAVVHPLQARSMVTRAHVRRVLGAVWGLAMLCSLPNTSLHGIRQLHVPCRGPVPDSAVCMLVRPRALYNMVVQTTALLFFCLPMAIMSVLYLLIGLRLRRERLLLMQEAKGRGSAAARSRYTCRLQQHDRGRRQVTKMLFVLVVVFGICWAPFHADRVMWSVVSQWTDGLHLAFQHVHVISGIFFYLGSAA-NPVLYSLMSSRFRETFQEALCLGACCHRLRPRHSSHSLSRMTTGSTLCDVGSLGSWVHPLAGNDGPEAQQETDPS |
| 1F88 Chain:A ((37-342)) | -----------------------------------------------------------FSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FVFGPTGCNLEGFFATLGGEI----ALWSLVVLAIERYVVVCKPM-SNFRFGENHAIMGVAFTWVMALACAAP--PLVGWSRY-------IPEGMQCSC--GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA----SATTQ---------KAEKEVTRMVIIMVIAFLICWLP-YAGVAFYIFTHQGSD-----FGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGK--NP------STTVSKTETSQVAPA-------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -244873 for 2365 contacts (-103.5/contact) +
2D Compatibility (PS) -29222 + (NN) -3771 + (LL) 4756
1D Compatibility (HY) -30000 + (ID) 4350
Total energy: -307460.0 ( -130.00 by residue)
QMean score : 0.298
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