Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGNITADNSSMSCTIDHTIHQTLAPVVYVTVLVVGFPANCLSLYF--GYLQIKARNELGVYLCNLTVADLFYICSLPFWLQYVLQHDNWSHGDLSCQVCGILLYENIYISVGFLCCISVDRYLAVAHPFRFHQFRTLKAAVGVSVVIWAKELLTSIYFLMHEEVIEDENQHRVCFEHYPIQAWQRAINYYRF---LVGFLFPICLLLASYQGILRAVRRSH----------------------------------------GTQKSRKDQIQ---------RLVLSTVVIFLACFLPYHVLLLVRSVWE----ASCDFAKGVFNAYHFSLLLTSFNCVADPVLYCFVSETTHRDLARLRGACLAFLTCSRTGRAREAYPLGAPEASGKSGAQGEEPELLTKLHPAFQTPNSPGSGGFPTGRLA |
| 4MBS Chain:A ((30-355)) | ------------------IAARLLPPLYSLVFIFGFVGNMLVILILINYKRLKSMTD--IYLLNLAISDLFFLLTVPFWAHYAAAQ--WDFGNTMCQLLTGLYFIGFFSGIFFIILLTIDRYLAVVHAVFALKARTVTFGVVTSVITWVVAVFASLPNIIFTRS-QKEGLHYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEEEKKRHRDVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQVTETLGMTHCCINPIIYAFVGEEFRNYLLVFFQ--------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MBS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -210024 for 1892 contacts (-111.0/contact) +
2D Compatibility (PS) -27016 + (NN) -3363 + (LL) 3628
1D Compatibility (HY) -33200 + (ID) 3700
Total energy: -273675.0 ( -144.65 by residue)
QMean score : 0.285
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