Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNWENESSPKEFILLGFSDRAWLQMPLFVVLLISYTITIFGNVSIMMVCILDPKLHTPMYFFLTNLSILDL-----CYTTT--TVPH---MLVNIGCNKKTISYAGCVAHLIIFLALGATECLL-LAVMSFDRYVAVCRPLHYVVIMNYWFCLRMA----AFSWLIGFGNSVLQSSLTLNMPRCGHQEVDHFFCEVPALLKLSCA-------DTKPIEAELFFFSVLILLIPVTLILISYGFIAQAVLKIRSAEGRQKAFGTCG------SHMIVVSL---------FYGTAIYMYLQPPSSTSKDWGKM---VSLFYGIITSMLNSLIYSLRNKDMKEAFKRLMPRIFFCKK |
| 1F88 Chain:A ((44-315)) | --------------------------MFLLIMLGFPI----NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG-----------FFATLGGEIALWSLVVLAIERYVVVCKPMS-----NFRFGENHAIMGVAFTWVMALA--------------CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG---QLVFTVKEAAA----SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF----THQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPST |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -181197 for 1628 contacts (-111.3/contact) +
2D Compatibility (PS) -22771 + (NN) -4227 + (LL) 5592
1D Compatibility (HY) -27200 + (ID) 3300
Total energy: -233103.0 ( -143.18 by residue)
QMean score : 0.203
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