Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSLQKLMEPEAGTNRTAVAEFILLGLVQTEEMQPVVFVLLLFAYLVTTGGNLSILAAVLVEPKLHAPMYFFLGNLSVLDVGCITVTVPAMLGRLLSHKSTISYDACLSQLFFFHLLAGMDCFLLTA-------MAYDRLLAICQPLTYSTRMSQTVQRMLVAASLACAFTNALTHTVAMSTLNFCGPNEVNHFYCDLPQLFQL----SCSSTQLNELLLFAVGFIMAGTPLVLII----TAYSHVAAAVLRIRSVEGRK--------KAFSTCGSHLTVVCL----FFGRGIFNYMRLGSEEASDKDKGVGVFNTV--INPMLNPLIYSLRNPDVQGALWQIFLGRRSLT |
2YCX Chain:A ((9-292)) | ------------------------------QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVP--FGATLVVRGTWLWGSFLCELW-----TSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICT------------VWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF----NRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFK---------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2YCX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -141576 for 1704 contacts (-83.1/contact) +
2D Compatibility (PS) -25315 + (NN) -7546 + (LL) 6072
1D Compatibility (HY) -23600 + (ID) 3400
Total energy: -195365.0 ( -114.65 by residue)
QMean score : 0.154
|
|
|