Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNRTMFGEFILLGLTNQPELQVMIFIFLFLTYMLSILGNLTIITLTLLDPHLQTPMYFFLRNFSFLEISFTSIFIPRFLTSMTT---GNKVISFAGCLTQYFFAIFLGATEFYLLASMSYDRYVAICKPLHYLTIMSSRVCIQLVFCSWLGGFLAILPPIILMTQVDFCVSNILNHYYCDYGPLVELACSDTSLLELMVILLAVVTLMVTLVLVTLSYTYIIRTILRIPSAQQRT----KAFSTCSSHMIVISLSYGSCMFMYINPS----AKEGGAFNK---GIAVLITSVTPLLNPFIYTLRNQQVKQAFKDSVKKIVKL |
3PXO Chain:A ((33-315)) | -----------------EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLN---LAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAF-TWVMALACAAPPLVGWSRY------IPEGMQCSCGIDYYTPHEETN-NESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PXO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -209125 for 2050 contacts (-102.0/contact) +
2D Compatibility (PS) -27233 + (NN) -4293 + (LL) 2088
1D Compatibility (HY) -24800 + (ID) 3200
Total energy: -266563.0 ( -130.03 by residue)
QMean score : 0.274
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