Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGSLYSEYLNPNKVQEHYNYTKETLETQETTSRQVASAFIVILCCAIVVENLLVLIAVARNSKFHSAMYLFLGNLAASDLLAGVAFV--ANTLLSGSVTLRLTPVQWFAREGSAFITL------SASVFSLLAIAIERHVAIA-KVKLYGSDKSCRMLLLIGASWLISLVLGGLPILGWNCLG-HLEAC---------STVLPLYAK---HYVLCVVTIFSIILLAIVALYVRIYCVVRSSHADMAAP------------QTLALLKTVTIVLGVFIVCWLPAFSILLLDYACPVHSCPILYKAHYFFAVSTLNSLLNPVIYTWRSRDLR---REVLRPLQCWRPGVGVQGRRRGGTPGHHLLPLRSSSSLERGMHMPTSPTFLEGNTVV |
3VG9 Chain:A ((21-304)) | -----------------------------------------------ILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCA---------ACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQ-SQGCGEGQVACLFEDVVPMNYMVYFNFFACVL----VPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR----------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VG9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -213555 for 1663 contacts (-128.4/contact) +
2D Compatibility (PS) -25136 + (NN) -10848 + (LL) 6612
1D Compatibility (HY) -25600 + (ID) 4100
Total energy: -272627.0 ( -163.94 by residue)
QMean score : 0.217
|
|
|