Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQAALTAFFVLLFSLLSLLGIAANGFIVLVLGREWLRYGRLLPLDMILISLGASRFCLQLVGTVHNFYYSAQKVEYSGGLGRQFFHLHWHFLNSATFWFCSWLSVLFCVKIANITHSTFLWLKWRFPGWVPWLLLGSVLISFIITLLFFWVNYPVYQEFLIRKFSGNMTYKWNT-RIETYYFPSLKLVIWSIPFSVFLVSIMLLINSLRRHTQRMQHNGH-----------------------------------------------------------------------------------------------------------------------------------S-----------------LQDPSTQAHTRALKSLISFLILYALSFLSLIID-AAKFI---SMQNDFYWPWQIAVYLCISVHPFILIFSNLKLRSVFSQLLLLARGFWVA |
| 3RZE Chain:A ((11-443)) | --------LVVVLSTICLVTVGLNLLVLYAVRSER---KLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQ---QPLRYL-KYRTKTRASATILGAWFLSFLWVIPILGWNH------------RREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHI------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RZE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -234260 for 1977 contacts (-118.5/contact) +
2D Compatibility (PS) -27211 + (NN) -1908 + (LL) 3684
1D Compatibility (HY) -16800 + (ID) 1850
Total energy: -278345.0 ( -140.79 by residue)
QMean score : 0.222
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