Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MENETVSELNQTQLQPRAVVALEYQVVTILLVLIICGLGIVGNIMVVLVVMRTKHMRTPTNCYLVSLAVADLMVLVAAGLPNITDSIYGSWVYGYVGCLCITYLQYLGINASSCSITAFTIERYIAICHPIKAQFLCTFSRAKKIIIFVWAFTSLYCML-----WFFLLDLN-ISTYKDAIVISCGYKISRNYYSPIYLMDFGVFYVVPMILATVLYGFIARILFLNPIPSDPKENSKTWKNDSTHQNTNLNVNTSNRCFNSTVSSRKQVTKMLAVVVILFALLWMPYRTLVVVNSFLSSPFQENWFLLFCRICIYLNSAINPVIYNLMSQKFRAAFRKLCNCKQKPTEKPANYSVALNYSVIKESDHFSTELDDITVTDTYLSATKVSFDDTCLASEVSFSQS |
3ZPQ Chain:A ((9-300)) | ----------------------QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDP--GCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVY-------------REAKEQ------------SRVMLMREHKAL-----------KTLGIIMGVFTLCWLPFFLVNIVNVF-NRDLVPDWLFVAFNWLGYANSAMNPIIY-CRSPDFRKAFKRLLA-------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ZPQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -257848 for 2048 contacts (-125.9/contact) +
2D Compatibility (PS) -27313 + (NN) 1327 + (LL) 8088
1D Compatibility (HY) -27600 + (ID) 4100
Total energy: -307446.0 ( -150.12 by residue)
QMean score : 0.268
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