Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPPLGTCGAQL--SQLAPCARYSVP----PL-PGQALPAPG-------PECCSALGSV--SRDCACGAID---------------------IINSLPAKCGLPRVS-CQ
1W2Q Chain:A ((11-118))
-GDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCD
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32374 for 358 contacts (-90.4/contact) +
2D Compatibility (PS) -7308 + (NN) -4387 + (LL) 120
1D Compatibility (HY) -5200 + (ID) 800
Total energy: -49949.0 ( -139.52 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: