Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPPGGCVPQLNRLLACRAYLVPGA-ADPSADCCSALSSISRDCACSTMG------------IINSIPSRCNIGRV-NCSA
2RKN Chain:A ((3-77))
---DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC--
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42431 for 380 contacts (-111.7/contact) +
2D Compatibility (PS) -6557 + (NN) -5226 + (LL) -44
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -56958.0 ( -149.89 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: