Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCDMDNDDFMACQPAAAATTDPQPAPSEACCATLGKADLRCLCSYKNSPWLSLYNIDPKRAMELPAKCGLTTPPDC
1N89 Chain:A ((5-67))
------SQLAVCASAILSGA----KPSGECCGNLRAQQ-GCFCQYAKDPTYGQ-YIRSPHARDTLTSCGLAVP-HC
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14328 for 399 contacts (-35.9/contact) +
2D Compatibility (PS) -6781 + (NN) -7005 + (LL) 116
1D Compatibility (HY) -3600 + (ID) 900
Total energy: -32498.0 ( -81.45 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: