Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGPAAGGAAVADPAGCQDDVVALNEACYKYVQKGAPTVPPSQECCDAVKSVDVPCVCSYLGSPGV-RDNISMEKVFYVSQQCGVSIPGNCGGSKV
2RKN Chain:A ((2-77))
------------IDLCGMSQDEL-NECKPAVSKENP-TSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC-----
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37698 for 517 contacts (-72.9/contact) +
2D Compatibility (PS) -8148 + (NN) -7887 + (LL) 180
1D Compatibility (HY) -2400 + (ID) 1150
Total energy: -57103.0 ( -110.45 by residue)
QMean score : 0.422
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: