Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVDTGAAAGVPSCASKLVPCGGYLNATA-APPPASCCGPLREAAANETACLCAILTNKAALQAFGVAPEQGLLLAKRCGVTTDASACAKSASSSATAAAAAAV
2RKN Chain:A ((3-75))
-------DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA---DFACLCGYKNSP-WLGSFGVDPELASALPKQCGLANAP-------------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34318 for 484 contacts (-70.9/contact) +
2D Compatibility (PS) -7209 + (NN) -908 + (LL) 2444
1D Compatibility (HY) -4400 + (ID) 1050
Total energy: -45441.0 ( -93.89 by residue)
QMean score : 0.241
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: