Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCNPTELSSCVPAI--TGGSKPSSTCCSKLKVQ-----EPCLCNYIKNPSLKQYVNSPGA-KKVLSNCGVTYPNC
1HYP Chain:A ((10-73))
------DLSICLNILGGSLGT--VDDCCALIGGLGDIEAIVCLCIQLRA--LGI-LNLNRNLQLILNSCGRSYPS-
General information:
TITO was launched using:
RESULT:
Template:
1HYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25847 for 333 contacts (-77.6/contact) +
2D Compatibility (PS) -5456 + (NN) 108 + (LL) 36
1D Compatibility (HY) -5600 + (ID) 800
Total energy: -37559.0 ( -112.79 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_1HYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HYP-query.scw
PDB file :
Tito_Scwrl_1HYP.pdb
: