Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NGPCSNTLSSLSACMPAIEGENPQSPSVACCDVVRGSDASCLCSIVTTYANLTDAMGINLRAALLLPKQCKRAVPSGFTCGEID
2RKN Chain:A ((2-75))
IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSP--WLGSFGVDPELASALPKQCGLANAP--------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36050 for 507 contacts (-71.1/contact) +
2D Compatibility (PS) -7960 + (NN) -6352 + (LL) 192
1D Compatibility (HY) -2400 + (ID) 1250
Total energy: -53820.0 ( -106.15 by residue)
QMean score : 0.348
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: