Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
INCDNDLIGLASKCQKYVVKQGSSAKPSPECCKVVKNVNVPCVCSHVTKQ-IED-LISMKKVFDVAKSCGKKVTPGTKCGSYTVPN
2RKN Chain:A ((4-75))
-LCGMSQDEL-NECKPAVSKENP-TSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP-----------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19999 for 471 contacts (-42.5/contact) +
2D Compatibility (PS) -7002 + (NN) -2204 + (LL) 236
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -30919.0 ( -65.65 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: