Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPSACSTQL---NNLSVCAPFVVPG-----APDS-----TPSADCCTALQTIDDACMCSTLR-----------------IASRLPSHCNLTPVTCDVNA
1S6D Chain:A ((9-102))
--SGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQPCQ---
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43757 for 401 contacts (-109.1/contact) +
2D Compatibility (PS) -6453 + (NN) -1761 + (LL) 236
1D Compatibility (HY) -7200 + (ID) 950
Total energy: -59885.0 ( -149.34 by residue)
QMean score : 0.356
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: