Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QECGNDLSNVQVCAAMVLPGSGRPNSECCAALQSTNRDCLCNALR----------------------AATSLPSLCNLPPV-DCGINT
1PNB Chain:B ((11-73))
------------------------REQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCPFI-
General information:
TITO was launched using:
RESULT:
Template:
1PNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24142 for 239 contacts (-101.0/contact) +
2D Compatibility (PS) -4372 + (NN) -3877 + (LL) 944
1D Compatibility (HY) -5600 + (ID) 600
Total energy: -37647.0 ( -157.52 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_1PNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PNB-query.scw
PDB file :
Tito_Scwrl_1PNB.pdb
: