Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGKTPIRSAAASLSPCLGAAGNAR-AAVPPACCSKVTALIKTAPKCLCAVLLSPLAKQAGIKPGIAITIPKRCSIKNRQAGKKCGKYTLP
2RKN Chain:A ((2-75))
-----IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA---DFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP-----------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37093 for 490 contacts (-75.7/contact) +
2D Compatibility (PS) -7003 + (NN) -153 + (LL) 508
1D Compatibility (HY) -4000 + (ID) 850
Total energy: -48591.0 ( -99.17 by residue)
QMean score : 0.283
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: