Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECPRSTPDMEAMKLIPCASAASDSN-APVSSGCCAQVKTLGHNPKCLCAVMLSNTAKSSGVKPEVAVTIPKRCNLADRPIGYKCGAYTLP
2RKN Chain:A ((2-75))
-----IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--DFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP-----------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23923 for 490 contacts (-48.8/contact) +
2D Compatibility (PS) -7524 + (NN) -3623 + (LL) 260
1D Compatibility (HY) -3200 + (ID) 1250
Total energy: -39260.0 ( -80.12 by residue)
QMean score : 0.185
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: