Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SEVPTSRGGMSPTQCKEKQRLLVNACSAVMFGH---SPSSDCCKHVRLTQVQCVCPAITSK-LAG-LVGVEHTIKQIESCGRTVPRNFKCGI
2RKN Chain:A ((2-77))
-----------IDLCGMSQDEL-NECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP--TC--
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35836 for 474 contacts (-75.6/contact) +
2D Compatibility (PS) -7104 + (NN) -1123 + (LL) 364
1D Compatibility (HY) -2000 + (ID) 950
Total energy: -46649.0 ( -98.42 by residue)
QMean score : 0.274
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: