Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGCDIDLLLPCLNASRDPRVKPDKRCCDAIRQFLPPRKQKSAID--CLCRLATSKEAVALKINLSAAIAIPQKCGIKFE----QRFYCQG
1SIY Chain:A ((4-88))
-GQVQGNLAQCIGFLQKG-GVVPPSCCTGVKNILNSSRTTADRRAVCSC--LKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCN-
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30519 for 544 contacts (-56.1/contact) +
2D Compatibility (PS) -8167 + (NN) -4101 + (LL) 348
1D Compatibility (HY) -1200 + (ID) 850
Total energy: -44489.0 ( -81.78 by residue)
QMean score : 0.422
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: