Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACSTDLSPYKPCLPAVMGTTPPSPTKECCIAVKSADILCLCEAVGTT--ELPGLNKEAALTLPQRCGAVAFSTRVCGSK
2RKN Chain:A ((4-77))
LCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP--TC---
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39128 for 488 contacts (-80.2/contact) +
2D Compatibility (PS) -7650 + (NN) -4837 + (LL) 16
1D Compatibility (HY) -1600 + (ID) 1200
Total energy: -54399.0 ( -111.47 by residue)
QMean score : 0.250
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: