Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVQGQGACNA--ATLQPCLAASKGTAAPTTQCCAAVKNVGG---AAGGPQCLCSLTTSALARANGVNPDAAMAIPQKCGLAVP----KGFTCNNKPVPGS
1SIY Chain:A ((2-90))
------TCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI-----
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26513 for 542 contacts (-48.9/contact) +
2D Compatibility (PS) -8603 + (NN) -4989 + (LL) -8
1D Compatibility (HY) -5200 + (ID) 1150
Total energy: -46463.0 ( -85.73 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: