Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACNAMTLQPCLAASQGKV--APDPACCTAIKNIGLSADGPQCLCTLATGPLAKANGVSADAAMAIPKKCGLPVPKGFMCNNKPVPGS
2RKN Chain:A ((8-75))
--SQDELNECKPAVSKENPTSPSQPCCTALQHA-----DFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19410 for 413 contacts (-47.0/contact) +
2D Compatibility (PS) -7006 + (NN) -4618 + (LL) 84
1D Compatibility (HY) -3200 + (ID) 1050
Total energy: -35200.0 ( -85.23 by residue)
QMean score : 0.389
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: