Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ATTCNALQLSPCAGAI--IGNAEPTAGCCSRMKAQ-----EPCLCDYAKDPNLQRYVNSPNG-KKVMAACKVPVPSC
1HYP Chain:A ((10-73))
-------DLSICLNILGGSLGT--VDDCCALIGGLGDIEAIVCLCIQLRA--LGI-LNLNRNLQLILNSCGRSYPS-
General information:
TITO was launched using:
RESULT:
Template:
1HYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20720 for 333 contacts (-62.2/contact) +
2D Compatibility (PS) -5560 + (NN) -375 + (LL) 436
1D Compatibility (HY) -4800 + (ID) 650
Total energy: -31669.0 ( -95.10 by residue)
QMean score : 0.297
(partial model without unconserved sides chains):
PDB file :
Tito_1HYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HYP-query.scw
PDB file :
Tito_Scwrl_1HYP.pdb
: