Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMVAAQCD--AGQLVVCAPAILGGA--MPTASCCSKLREQEQQGCFCEYLRNPAYAGY-INSQTARGAIAACNVTLP-QCS
2RKN Chain:A ((3-77))
----DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHAD-FACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC-
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31118 for 432 contacts (-72.0/contact) +
2D Compatibility (PS) -6974 + (NN) -1354 + (LL) 844
1D Compatibility (HY) -4000 + (ID) 800
Total energy: -43402.0 ( -100.47 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: