Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGATPADRMALKLAPCASAGQDPA-SAPSSGCCTAVHTIGKQSPKCLCAVMLSNTARSAGIKPEAAITIPKRCNLVDRPVGYKCGAYTLP
2RKN Chain:A ((2-75))
-----IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA---DFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP-----------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18700 for 490 contacts (-38.2/contact) +
2D Compatibility (PS) -7486 + (NN) -3756 + (LL) 356
1D Compatibility (HY) -2400 + (ID) 1150
Total energy: -33136.0 ( -67.62 by residue)
QMean score : 0.091
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: