Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LEMSCIQNLLPCKPYLPGTE--PPPPVCCLPLKDMVAHQAQCLCSALANPDLLKDFNVTMDGALKLAKTCGASVDMSVCKNGNH
2RKN Chain:A ((10-75))
------DELNECKPAVSKENPTSPSQPCCTALQHA---DFACLCGYKNSP-WLGSFGVDPELASALPKQCGLANAP--------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37645 for 402 contacts (-93.6/contact) +
2D Compatibility (PS) -6589 + (NN) -5804 + (LL) 1020
1D Compatibility (HY) -2000 + (ID) 1000
Total energy: -52018.0 ( -129.40 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: