Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQQPANCNGQLNQLIPCLSYVQGQATQPAQSCCSGLKSIAGSN-------PACLCSLISANAGSIPGINSTLALELPAKCNLQGL----NPSLCSVFISGFLPLR
1AFH Chain:A ((3-91))
-----SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSR---------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42035 for 579 contacts (-72.6/contact) +
2D Compatibility (PS) -7977 + (NN) -2857 + (LL) 1092
1D Compatibility (HY) -3600 + (ID) 1250
Total energy: -56627.0 ( -97.80 by residue)
QMean score : 0.344
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: