Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YCFLADIQPCIPAIKATGPRQAPTAACCDSISKTSQVCLCQAVSGPETPRAGLSVGKALVLPLECGINVPSGTTCAKFFLVVFDLVFA
2RKN Chain:A ((9-75))
---QDELNECKPAVSKENP-TSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP-----------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26763 for 431 contacts (-62.1/contact) +
2D Compatibility (PS) -6988 + (NN) -5443 + (LL) 2100
1D Compatibility (HY) -1600 + (ID) 850
Total energy: -39544.0 ( -91.75 by residue)
QMean score : 0.268
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: