Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VECKNNIADLLPCQAAAQSET-STPSTECCTAVGKFKDDPACLCSTIAAAQAAGFTIDAPVAATIPKRCKLDGYPTSCSKSK
2RKN Chain:A ((3-75))
DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--DFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP-------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24225 for 484 contacts (-50.1/contact) +
2D Compatibility (PS) -7226 + (NN) -1547 + (LL) 140
1D Compatibility (HY) -3600 + (ID) 1200
Total energy: -37658.0 ( -77.81 by residue)
QMean score : 0.299
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: