Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QDCNGLVTTVVSQCSGSYVNGS--PPSAGCCGAARAVSDGCLCPKVTPQ--IADAVNKQRIQAMASACNRPLPRTCGALQFPSRK
2RKN Chain:A ((3-77))
DLCGMSQDEL-NECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC---------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12053 for 471 contacts (-25.6/contact) +
2D Compatibility (PS) -7313 + (NN) -3067 + (LL) 588
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -24595.0 ( -52.22 by residue)
QMean score : 0.150
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: