Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AMSAAECKEERRLGIKVCTPVVYGN---DPTPACCERVRVTHVECVCPMITPK-LAP-LIDVDRLVRLIKGCGRKVPRHFKCGGITTP
2RKN Chain:A ((2-77))
---IDLCGMSQDEL-NECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP--TC------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39523 for 474 contacts (-83.4/contact) +
2D Compatibility (PS) -7111 + (NN) -2350 + (LL) 528
1D Compatibility (HY) -1600 + (ID) 800
Total energy: -50856.0 ( -107.29 by residue)
QMean score : 0.356
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: