Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVSAAKCKEERRLGINACKAVVYGK---SPTPACCHRMRVTHLGCVCSVITPK-LA-ALVDVNRMIELVKGCGRKLPRHYKCGSITFP
2RKN Chain:A ((2-75))
---IDLCGMSQDEL-NECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP----------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34996 for 461 contacts (-75.9/contact) +
2D Compatibility (PS) -6766 + (NN) 1040 + (LL) 816
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -42406.0 ( -91.99 by residue)
QMean score : 0.220
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: