Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----DTSPSQCKEERN--LLVNACRPVIYGR-------SPS-------ADCCQRVRVSHVECVCPYVTPKTAAIIGVIGVDNVVKKIEGCGRTVPRKFKCGSITTP---
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMA----HNLP--IECNLMSQPCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33957 for 561 contacts (-60.5/contact) +
2D Compatibility (PS) -7560 + (NN) 4421 + (LL) -20
1D Compatibility (HY) -5600 + (ID) 800
Total energy: -43516.0 ( -77.57 by residue)
QMean score : 0.300
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: