Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------APSAAECKEETRLAIKACKPVVYGMDPSPACCERARVTHVECVCPLITPKLAALIDVNKAVRIIEGCGRKVPRHYKCGSITTP-----
1JJU Chain:A ((274-351))
AAPQVLAVAPARLKIGEETQLRVAG-----------------TGLGSDLTLPEGVAGSVESAGN-GVTVLKLTATGTPGPVSLELGGQKVDLVAYD
General information:
TITO was launched using:
RESULT:
Template:
1JJU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21574 for 402 contacts (-53.7/contact) +
2D Compatibility (PS) -6894 + (NN) 2394 + (LL) 760
1D Compatibility (HY) -400 + (ID) 500
Total energy: -26214.0 ( -65.21 by residue)
QMean score : 0.164
(partial model without unconserved sides chains):
PDB file :
Tito_1JJU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJU-query.scw
PDB file :
Tito_Scwrl_1JJU.pdb
: