Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QTICNMSGEGLMACKPAVSPPNPAPPSAACCSALSHADMHCLCSYRNSKLLPSMGIDPNLALQLPKKCKFPNAAHC
2RKN Chain:A ((2-77))
IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45829 for 526 contacts (-87.1/contact) +
2D Compatibility (PS) -8133 + (NN) -9975 + (LL) 0
1D Compatibility (HY) -8400 + (ID) 2050
Total energy: -74387.0 ( -141.42 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: