Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKLSYILIVIFISFPILLAASENNEKTQIKDIKCIGNERVGDQTIKFYIKLEPDSYVNDDDIDSIIKSLYKTKLFASVHAYIDNEKKLVIKVQENPLINKVILKGNKQFKSKELLNNVIQSKPLTIFTETKLQSDLVNLVTLYRHNGKIGVKVEYELDKLDGNRVNLIFKVKEGKTSRVKSVRFIGNKNFSENELERAIKVQSNDIFNKLFRAIFKGGNHYSPQYLLTNEELLDRFYSSKGYINNSIQPIAEIDNNNQIELTFLIDEGQQYLFGSNKVNVEAEIQDPDLKEKVLELITKEDNKVFDRVKVSNAVEKINKYLNEIGYIFAKVNPEYTQHGNVVDVTYRVLPGKKIYINQITIDGNDRTLDKVIRSKLSVAEGDAYNTSEVQKSRRRLIGSDFFETVKINSYAINDNAVNLDLNVKEKNTTSLYLGGGVSFPGGAFIKTDFKDRNLFGTGKELSFALEKSQYVFSTNVEVVENNFNDSDTSLGVDVFY---ERQDKPNTTFDSCDWGGIAQLLHKIIENLTNSIRYSYKYNHIHMDNKGGKDEDISEIIRSQQGEYQISS------------VGYTLAYNKLDNLYAPREGYLLRLSQDISGLGGNMNFLKSEFLSFYTHPILSKIDDD--IILRFKMAAGYIFSYTDKELNIGQRFFKGGNE-IRGFDLSGIGPR------------------------AKDKNKS--SLGGKTYFNLTQQVDFPLPKLYDYVGIKGSLFVDYATLFGLDI-KKEYEG--KYHDSKLVRVSPGFGFSMPSPFGGRFRLDFGFPLAKEPYDIIPSSNIKFSIEVGI |
| 4N75 Chain:A ((12-381)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GVSFQAGV------QQDNWLGTGYAVGINGTKNDYQTYAELSVTNPYFTVDGVSLGGRLFYNDFQADDADLSDYTNKSYGTDVTLGFPI--NEYNSLRAGLGYVHNSLSNM--QPQVAMWRYLYSMGEHPSTSDQDNSFKTDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVTLDTATYVP----IDDDHKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYFPHQASNYDPDYDYECATQDGAKDLCKSDDAVGGNAMAVASLEFITPTPFIS----VRTSFFWDMGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPLG---PLVFSYAQPFKKYDGDKAEQFQFNIGKTW |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4N75.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 20580 for 2269 contacts (9.1/contact) +
2D Compatibility (PS) -33622 + (NN) -6888 + (LL) 30384
1D Compatibility (HY) -14800 + (ID) 4550
Total energy: -8896.0 ( -3.92 by residue)
QMean score : 0.207
|
|
|