Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQYTFRIDNKDPLYKKLIKLPTAYYRLKHDGNKHNIHSNNNVILEIGNNTNGVKLRWENDKIVLHKGSSALY
1VCH Chain:A ((2-23))
-ETYPITVGGVTRHVPLIEPLPGRRIPLVEFLGDPEFTRAAAEALRPLVPKEAEILFTTETSPIPLTHVLAEA
General information:
TITO was launched using:
RESULT:
Template:
1VCH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1097 for 71 contacts (15.5/contact) +
2D Compatibility (PS) -2531 + (NN) -1709 + (LL) 208
1D Compatibility (HY) -1600 + (ID) 150
Total energy: -4685.0 ( -65.99 by residue)
QMean score : -0.122
(partial model without unconserved sides chains):
PDB file :
Tito_1VCH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VCH-query.scw
PDB file :
Tito_Scwrl_1VCH.pdb
: