Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLSIVVAPDERLTTRASEVTGINDKIKELVNDMFETMYNAEGLGLAAVQIGVLKRIFVMDIQLEDIKGEPVGYESTGKFCMINPEITELSDEQVILKEGCLSIPEQSHEIRRPKYLTVKYKDLNNKEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAEKFKRHYER
2W3T Chain:A ((3-163))
---LQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVID----------VSENRDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKAR
General information:
TITO was launched using:
RESULT:
Template:
2W3T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92365 for 1253 contacts (-73.7/contact) +
2D Compatibility (PS) -17110 + (NN) -877 + (LL) 896
1D Compatibility (HY) -13600 + (ID) 3650
Total energy: -126706.0 ( -101.12 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_2W3T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W3T-query.scw
PDB file :
Tito_Scwrl_2W3T.pdb
: