Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSISSPRINVMLDSVRSASKQLMRDFNELQISNVKSADFINKTYSRSKQTIYNCLHDYKQDYGFIFEDDIDQEAKE---KDYTWFIMPIEGRENFSSRMVYFAVSVCLVHKNKVVAAVVNTPALRETFWAEEKKGAFL----------EDFRSRHIKMRMKSHEG--SLIDVSGNLLNKLLPGNSNIRSVGSTVLGFTYLAAGRYSGIVYSGVNKYKALLGRLLLQESAGRLTEDNGFIIAGDVKLT
1IMD Chain:A ((41-240))
-------------------------------------DLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHRFPFVAVSIGFAVNKKIEFGVVYSCVEGKMYTARKGKGAFCNGQKLQVSQQEDITKSLLVTELGSSRTPETVRMVLSNMEKLFCIPVHGIRSVGTAAVNMCLVATGGADAYYEMGIHCWDVAGAGIIVTEAGGVLMDVTGGPFDLMSRRV
General information:
TITO was launched using:
RESULT:
Template:
1IMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86810 for 1439 contacts (-60.3/contact) +
2D Compatibility (PS) -19860 + (NN) -5984 + (LL) 2776
1D Compatibility (HY) -10400 + (ID) 2150
Total energy: -122428.0 ( -85.08 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_1IMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IMD-query.scw
PDB file :
Tito_Scwrl_1IMD.pdb
: