Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLPVVHLLPNNDLAQFNYRHVKIDGILSDIELYVFAGQSGYHALSPMLLTTGRYMLVNKGIVREKEEKKAKIAKVVADGVLYCDSSKSKSWLIKNDIALNTWFTLSTEEISNELGIELEKCILWQKGFSGKLAIQPMKHLEYAITWFALSLIWLIMCIAYYRQNKCHLSS
1N6N Chain:A ((41-98))
--------------AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1N6N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8739 for 262 contacts (-33.4/contact) +
2D Compatibility (PS) -6207 + (NN) -201 + (LL) 2884
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -15563.0 ( -59.40 by residue)
QMean score : -0.012
(partial model without unconserved sides chains):
PDB file :
Tito_1N6N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N6N-query.scw
PDB file :
Tito_Scwrl_1N6N.pdb
: