Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRQSGASETKGFYLSGRYYSRFFASMGKLKLRSEDVNYRIATDFWNDGRDTPEELYHLDKHS
1YKH Chain:B ((17-30))
--------------------EQFCATLNYIDKNHGFEVVPPEEFSNTIDELSTDIILKTRQIN
General information:
TITO was launched using:
RESULT:
Template:
1YKH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2319 for 48 contacts (48.3/contact) +
2D Compatibility (PS) -1501 + (NN) -1017 + (LL) 848
1D Compatibility (HY) -1200 + (ID) 100
Total energy: -651.0 ( -13.56 by residue)
QMean score : -0.158
(partial model without unconserved sides chains):
PDB file :
Tito_1YKH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YKH-query.scw
PDB file :
Tito_Scwrl_1YKH.pdb
: