Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEACKTCEESQRELERELENLESQLSAVEKEKEDLENESAELQKQVQTLKEDKKMCKKD
1GD2 Chain:E ((33-66))
-------------ALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL----------
General information:
TITO was launched using:
RESULT:
Template:
1GD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6352 for 126 contacts (50.4/contact) +
2D Compatibility (PS) -4006 + (NN) -3731 + (LL) 2020
1D Compatibility (HY) -1600 + (ID) 350
Total energy: -1315.0 ( -10.44 by residue)
QMean score : 0.704
(partial model without unconserved sides chains):
PDB file :
Tito_1GD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GD2-query.scw
PDB file :
Tito_Scwrl_1GD2.pdb
: